Newer
Older
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!!! CSO - CAMS Satellite Operator
!!! Settings for Tutorial.
!!!
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!----------------------------------------------------------
! job tree
!----------------------------------------------------------
! class to create a job tree:
cso.class : utopya.UtopyaJobTree
! list of sub-elements:
cso.elements : tutorial
! class to create a job tree:
cso.tutorial.class : utopya.UtopyaJobTree
! list of sub-elements:
!cso.tutorial.elements : inquire-scihub \
! convert listing catalogue \
! sim-catalogue \
! gridded gridded-catalogue
!~ preprocessor steps one by one ...
!cso.tutorial.elements : convert
!cso.tutorial.elements : listing
Arjo Segers
committed
!cso.tutorial.elements : catalogue
! ... after running the obs.oper:
!cso.tutorial.elements : sim-catalogue
!cso.tutorial.elements : gridded
Arjo Segers
committed
cso.tutorial.elements : gridded-catalogue
! *
! single step:
cso.tutorial.inquire-scihub.class : utopya.UtopyaJobStep
! two tasks:
cso.tutorial.inquire-scihub.tasks : table plot
!~ inquire available files:
cso.tutorial.inquire-scihub.table.class : cso.CSO_SciHub_Inquire
Arjo Segers
committed
cso.tutorial.inquire-scihub.table.args : '${__filename__}', \
!~ create plot of available versions:
cso.tutorial.inquire-scihub.plot.class : cso.CSO_Inquire_Plot
Arjo Segers
committed
cso.tutorial.inquire-scihub.plot.args : '${__filename__}', \
! *
! single step:
cso.tutorial.convert.class : utopya.UtopyaJobStep
cso.tutorial.convert.task.class : cso.CSO_S5p_Convert
Arjo Segers
committed
cso.tutorial.convert.task.args : '${__filename__}', \
rcbase='cso.tutorial.convert'
! *
! single step:
cso.tutorial.listing.class : utopya.UtopyaJobStep
! task:
cso.tutorial.listing.task.class : cso.CSO_S5p_Listing
Arjo Segers
committed
cso.tutorial.listing.task.args : '${__filename__}', \
! single step:
cso.tutorial.catalogue.class : utopya.UtopyaJobStep
! two tasks:
cso.tutorial.catalogue.tasks : figs index
! catalogue creation task:
cso.tutorial.catalogue.figs.class : cso.CSO_Catalogue
Arjo Segers
committed
cso.tutorial.catalogue.figs.args : '${__filename__}', \
rcbase='cso.tutorial.catalogue'
! indexer task:
cso.tutorial.catalogue.index.class : utopya.Indexer
Arjo Segers
committed
cso.tutorial.catalogue.index.args : '${__filename__}', \
rcbase='cso.tutorial.catalogue-index'
! *
! single step:
cso.tutorial.sim-catalogue.class : utopya.UtopyaJobStep
! two tasks:
cso.tutorial.sim-catalogue.tasks : figs index
! catalogue creation task:
cso.tutorial.sim-catalogue.figs.class : cso.CSO_SimCatalogue
Arjo Segers
committed
cso.tutorial.sim-catalogue.figs.args : '${__filename__}', \
rcbase='cso.tutorial.sim-catalogue'
! indexer task:
cso.tutorial.sim-catalogue.index.class : utopya.Indexer
Arjo Segers
committed
cso.tutorial.sim-catalogue.index.args : '${__filename__}', \
rcbase='cso.tutorial.sim-catalogue-index'
!
! * gridded fields
!
! single step:
cso.tutorial.gridded.class : utopya.UtopyaJobStep
! catalogue creation task:
cso.tutorial.gridded.task.class : cso.CSO_GriddedAverage
Arjo Segers
committed
cso.tutorial.gridded.task.args : '${__filename__}', \
rcbase='cso.tutorial.gridded'
! *
! single step:
cso.tutorial.gridded-catalogue.class : utopya.UtopyaJobStep
! two tasks:
cso.tutorial.gridded-catalogue.tasks : figs index
! catalogue creation task:
cso.tutorial.gridded-catalogue.figs.class : cso.CSO_GriddedCatalogue
Arjo Segers
committed
cso.tutorial.gridded-catalogue.figs.args : '${__filename__}', \
rcbase='cso.tutorial.gridded-catalogue'
! indexer task:
cso.tutorial.gridded-catalogue.index.class : utopya.Indexer
Arjo Segers
committed
cso.tutorial.gridded-catalogue.index.args : '${__filename__}', \
rcbase='cso.tutorial.gridded-catalogue-index'
!======================================================================
!===
!=== settings
!===
!======================================================================
!-----------------------------------------------------------
! id's
!-----------------------------------------------------------
! file format:
my.cso.format : 1.0
! file format convention:
my.cso.convention : CF-1.7
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
!-----------------------------------------------------------
! domain
!-----------------------------------------------------------
!
! Used for:
! - orbit selection durning download
! - pixel selection
! - map plots
!
! region name:
my.region : CAMS
! CAMS regional ensemble domain:
my.region.west : -30.0
my.region.east : 45.0
my.region.south : 30.0
my.region.north : 76.0
! size of map figures for this region,
! default size is (8,6)
my.region.figsize : (8,6)
!----------------------------------------------------------
! timerange
!----------------------------------------------------------
my.timerange.start : 2018-06-01 00:00
my.timerange.end : 2018-06-03 23:59
!----------------------------------------------------------
!----------------------------------------------------------
! Attributes written to output files.
my.attr.author : Your Name
my.attr.institution : CSO
my.attr.email : Your.Name@cso.org
! base location for work directories:
Arjo Segers
committed
my.work : /Scratch/${USER}/CSO-tutorial
!----------------------------------------------------------
! job step defaults
!----------------------------------------------------------
! run jobs in foreground:
*.script.class : utopya.UtopyaJobScriptForeground
! search path for python modules:
Arjo Segers
committed
*.pypath : ${CSO_PREFIX}/py
! work directory for jobs;
*.workdir : ${my.work}/__NAME2PATH__
! for new job files, use jobtree settings from this file:
*.rcfile : ${__filename__}
!======================================================================
!===
!===
!======================================================================
! Obtain names of all available S5p files.
! Stored as csv with processing type, processor version, filenames, etc.
cso.tutorial.inquire-scihub-table.timerange.start : ${my.timerange.start}
cso.tutorial.inquire-scihub-table.timerange.end : ${my.timerange.end}
!
! server url ;
! provide login/password in ~/.netrc:
!
! machine s5phub.copernicus.eu login s5pguest password s5pguest
!
cso.tutorial.inquire-scihub-table.url : https://s5phub.copernicus.eu/dhus
!~ domain specified as: west,south:east,north
cso.tutorial.inquire-scihub-table.area : ${my.region.west},${my.region.south}:${my.region.east},${my.region.north}
! search query, obtained from interactive download:
!
! platformname : Sentinel-5
! producttype : L2__NO2___ | L2__CO____ (always 10 characters!)
! processinglevel : L2
!
cso.tutorial.inquire-scihub-table.query : platformname:Sentinel-5 AND \
producttype:L2__NO2___ AND \
processinglevel:L2
cso.tutorial.inquire-scihub-table.output.file : ${my.work}/Copernicus/Copernicus_S5p_NO2_scihub_%Y-%m-%d.csv
cso.tutorial.inquire-scihub-plot.renew : True
cso.tutorial.inquire-scihub-plot.file : ${cso.tutorial.inquire-scihub-table.output.file}
!!~ specify dates ("yyyy-mm-dd") to use historic tables,
!! default is table of today:
!cso.tutorial.inquire-scihub-plot.filedate : 2022-01-28
cso.tutorial.inquire-scihub-plot.output.file : ${my.work}/Copernicus/Copernicus_S5p_NO2_${my.region}__%Y-%m-%d.png
!======================================================================
!===
!===
!======================================================================
! renew existing files (True|False) ?
cso.tutorial.convert.renew : True
!cso.tutorial.convert.renew : False
! time range:
cso.tutorial.convert.timerange.start : ${my.timerange.start}
cso.tutorial.convert.timerange.end : ${my.timerange.end}
!~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
! input files
!~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
! created by 'inquire-scihub' job:
cso.tutorial.convert.inquire.file : ${my.work}/Copernicus/Copernicus_S5p_NO2_scihub_%Y-%m-%d.csv
!!~ historic inquire ...
!cso.tutorial.convert.inquire.filedate : 2022-02-02
! selection keyword:
my.s5p.no2.selection : C03
! Provide ';' seperated list of to decide if a particular orbit file should be processed.
! If more than one file is available for a particular orbit (from "OFFL" and "RPRO" processing),
! the file with the first match will be used.
! The expressions should include templates '%{header}' for the column values.
! Example to select files from collection '03', preferably from processing 'RPRO' but otherwise from 'OFFL':
! (%{collection} == '03') and (%{processing} == 'RPRO') ; \
! (%{collection} == '03') and (%{processing} == 'OFFL')
!
#if "${my.s5p.no2.selection}" == "C03"
cso.tutorial.convert.selection : (%{collection} == '03') and (%{processing} == 'RPRO') ; \
(%{collection} == '03') and (%{processing} == 'OFFL')
#else
#error unsupported my.s5p.no2.selection "${my.s5p.no2.selection}"
#endif
! input directory;
! files are searched here or downloaded to if not present yet;
! supported templates:
! %{processing}
cso.tutorial.convert.input.dir : ${my.work}/Copernicus/S5P/%{processing}/NO2/%Y/%m
! remove downloaded input files after convert?
cso.tutorial.convert.downloads.cleanup : False
! selection names:
cso.tutorial.convert.filters : lons lats valid quality
! filter settings:
cso.tutorial.convert.filter.lons.var : PRODUCT/longitude
cso.tutorial.convert.filter.lons.type : minmax
cso.tutorial.convert.filter.lons.minmax : ${my.region.west} ${my.region.east}
cso.tutorial.convert.filter.lons.units : degrees_east
! filter settings:
cso.tutorial.convert.filter.lats.var : PRODUCT/latitude
cso.tutorial.convert.filter.lats.type : minmax
cso.tutorial.convert.filter.lats.minmax : ${my.region.south} ${my.region.north}
cso.tutorial.convert.filter.lats.units : degrees_north
! skip pixel with "no data", use the "qa_value" variable to check:
cso.tutorial.convert.filter.valid.var : PRODUCT/qa_value
cso.tutorial.convert.filter.valid.type : valid
! Comment in "PRODUCT/qa_value" variable:
! "A continuous quality descriptor,
! varying between 0 (no data) and 1 (full quality data).
! Recommend to ignore data with qa_value < 0.5"
! Recomended is qa_value>=0.75 to remove clouded and other problematic pixels;
! here use 0.5 to include retrievals over clouds and snow/ice.
cso.tutorial.convert.filter.quality.var : PRODUCT/qa_value
cso.tutorial.convert.filter.quality.type : min
cso.tutorial.convert.filter.quality.units : 1
!~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
! output files
!~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
! output directory and filename:
! - times are taken from mid of selection, rounded to hours
! - use '%{processing}' for the processing name
cso.tutorial.convert.output.filename : ${my.work}/CSO-data/S5p/%{processing}/NO2/${my.region}/%Y/%m/S5p_%{processing}_NO2_%{orbit}.nc
! pack variables on output:
cso.tutorial.convert.output.packed : True
! zlib compression level, 0 for no compression:
cso.tutorial.convert.output.complevel : 1
! global attributes:
cso.tutorial.convert.output.attrs : format Conventions \
author institution email
!
cso.tutorial.convert.output.attr.format : ${my.cso.format}
cso.tutorial.convert.output.attr.Conventions : ${my.cso.convention}
cso.tutorial.convert.output.attr.author : ${my.attr.author}
cso.tutorial.convert.output.attr.institution : ${my.attr.institution}
cso.tutorial.convert.output.attr.email : ${my.attr.email}
! no need to swap layes:
cso.tutorial.convert.swap_layers : False
! ~ variables
! which fields to be put out ?
cso.tutorial.convert.output.vars : longitude longitude_bounds \
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
track_longitude track_longitude_bounds \
track_latitude track_latitude_bounds \
time \
qa_value \
pressure kernel_trop amf amf_trop nla \
vcd vcd_errvar \
cloud_fraction cloud_radiance_fraction
!
! Describe per variable:
! * .dims : dimensions list:
! pixel : selected pixels
! corner : number of footprint bounds (probably 4)
! layer : number of layers in atmospheric profile (layers in kernel)
! layeri : number of layer interfaces in atmospheric profile (layer+1)
! retr : number of layers in retrieval product (1 for columns) ;
! for error covariance use (retr,retr0) to avoid repeated dimensions
! track_scan : original scan index in 2D track
! track_pixel : original ground pixel in 2D track
! * .specal : keyword to select special processing
! * None : no special processing (default)
! * track_longitude : longiudes at centers of original 2D track
! * track_latitude : latiudes at centers of original 2D track
! * track_longitude_bounds : longiude bounds at centers of original 2D track
! * track_latitude_bounds : latiude bounds at centers of original 2D track
! * .units : target units if different from original
! * .oper : special postprocessing, currently supported:
! * square : fill variable with squared valued (used to form variance from standard deviation)
! In case no special processing is needed:
! * .from : original variable (group path and variable name)
!
! center longitudes; remove bounds attribute, no coordinate ...
cso.tutorial.convert.output.var.longitude.dims : pixel
cso.tutorial.convert.output.var.longitude.from : PRODUCT/longitude
cso.tutorial.convert.output.var.longitude.attrs : { 'bounds' : None }
! center latitudes; remove bounds attribute, no coordinate ...
cso.tutorial.convert.output.var.latitude.dims : pixel
cso.tutorial.convert.output.var.latitude.from : PRODUCT/latitude
cso.tutorial.convert.output.var.latitude.attrs : { 'bounds' : None }
! corner longitudes; no units in file:
cso.tutorial.convert.output.var.longitude_bounds.dims : pixel corner
cso.tutorial.convert.output.var.longitude_bounds.from : PRODUCT/SUPPORT_DATA/GEOLOCATIONS/longitude_bounds
cso.tutorial.convert.output.var.longitude_bounds.units : degrees_east
! corner latitudes, no units in file:
cso.tutorial.convert.output.var.latitude_bounds.dims : pixel corner
cso.tutorial.convert.output.var.latitude_bounds.from : PRODUCT/SUPPORT_DATA/GEOLOCATIONS/latitude_bounds
cso.tutorial.convert.output.var.latitude_bounds.units : degrees_north
! original track:
!~ center lon; remove bounds attribute, no coordinate ...
cso.tutorial.convert.output.var.track_longitude.dims : track_scan track_pixel
cso.tutorial.convert.output.var.track_longitude.special : track_longitude
cso.tutorial.convert.output.var.track_longitude.from : PRODUCT/longitude
cso.tutorial.convert.output.var.track_longitude.attrs : { 'bounds' : None }
!~ center lat; remove bounds attribute, no coordinate ...
cso.tutorial.convert.output.var.track_latitude.dims : track_scan track_pixel
cso.tutorial.convert.output.var.track_latitude.special : track_latitude
cso.tutorial.convert.output.var.track_latitude.from : PRODUCT/latitude
cso.tutorial.convert.output.var.track_latitude.attrs : { 'bounds' : None }
!~ corner lons
cso.tutorial.convert.output.var.track_longitude_bounds.dims : track_scan track_pixel corner
cso.tutorial.convert.output.var.track_longitude_bounds.special : track_longitude_bounds
cso.tutorial.convert.output.var.track_longitude_bounds.from : PRODUCT/SUPPORT_DATA/GEOLOCATIONS/longitude_bounds
cso.tutorial.convert.output.var.track_longitude_bounds.units : degrees_east
!~ corner lats
cso.tutorial.convert.output.var.track_latitude_bounds.dims : track_scan track_pixel corner
cso.tutorial.convert.output.var.track_latitude_bounds.special : track_latitude_bounds
cso.tutorial.convert.output.var.track_latitude_bounds.from : PRODUCT/SUPPORT_DATA/GEOLOCATIONS/latitude_bounds
cso.tutorial.convert.output.var.track_latitude_bounds.units : degrees_north
! time value per scan line
cso.tutorial.convert.output.var.time.dims : pixel
cso.tutorial.convert.output.var.time.special : time-delta
cso.tutorial.convert.output.var.time.tref : PRODUCT/time
cso.tutorial.convert.output.var.time.dt : PRODUCT/delta_time
! vertical column density:
cso.tutorial.convert.output.var.vcd.dims : pixel retr
cso.tutorial.convert.output.var.vcd.from : PRODUCT/nitrogendioxide_tropospheric_column
cso.tutorial.convert.output.var.vcd.attrs : { 'ancillary_variables' : None }
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
! error variance in vertical column density (after application of kernel),
! fill with single element 'covariance matrix', from square of standard error:
! use dims with different names to avoid that cf-checker complains:
cso.tutorial.convert.output.var.vcd_errvar.dims : pixel retr retr0
cso.tutorial.convert.output.var.vcd_errvar.special : square
cso.tutorial.convert.output.var.vcd_errvar.from : PRODUCT/nitrogendioxide_tropospheric_column_precision_kernel
!~ skip standard name, modifier "standard_error" is not valid anymore:
cso.tutorial.convert.output.var.vcd_errvar.attrs : { 'standard_name' : None }
! Convert from hybride coefficient bounds in (2,nlev) aray to 3D half level pressure:
cso.tutorial.convert.output.var.pressure.dims : pixel layeri
cso.tutorial.convert.output.var.pressure.special : hybounds_to_pressure
cso.tutorial.convert.output.var.pressure.sp : PRODUCT/SUPPORT_DATA/INPUT_DATA/surface_pressure
cso.tutorial.convert.output.var.pressure.hyab : PRODUCT/tm5_constant_a
cso.tutorial.convert.output.var.pressure.hybb : PRODUCT/tm5_constant_b
cso.tutorial.convert.output.var.pressure.units : Pa
! (total) airmass factor:
cso.tutorial.convert.output.var.amf.dims : pixel retr
cso.tutorial.convert.output.var.amf.from : PRODUCT/air_mass_factor_total
cso.tutorial.convert.output.var.amf.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! tropospheric airmass factor:
cso.tutorial.convert.output.var.amf_trop.dims : pixel retr
cso.tutorial.convert.output.var.amf_trop.from : PRODUCT/air_mass_factor_troposphere
cso.tutorial.convert.output.var.amf_trop.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! number of apriori layers in retrieval layer,
! enforce that it is stored as a short integer:
cso.tutorial.convert.output.var.nla.dims : pixel retr
cso.tutorial.convert.output.var.nla.dtype : i2
cso.tutorial.convert.output.var.nla.from : PRODUCT/tm5_tropopause_layer_index
cso.tutorial.convert.output.var.nla.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! description:
! kernel := averaging_kernel * amf/amf_trop
! for layers up to l_trop, zero above
cso.tutorial.convert.output.var.kernel_trop.dims : pixel layer retr
cso.tutorial.convert.output.var.kernel_trop.special : kernel_trop
cso.tutorial.convert.output.var.kernel_trop.avk : PRODUCT/averaging_kernel
cso.tutorial.convert.output.var.kernel_trop.amf : PRODUCT/air_mass_factor_total
cso.tutorial.convert.output.var.kernel_trop.amft : PRODUCT/air_mass_factor_troposphere
cso.tutorial.convert.output.var.kernel_trop.troplayer : PRODUCT/tm5_tropopause_layer_index
cso.tutorial.convert.output.var.kernel_trop.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! cloud property:
cso.tutorial.convert.output.var.cloud_fraction.dims : pixel
cso.tutorial.convert.output.var.cloud_fraction.from : PRODUCT/SUPPORT_DATA/INPUT_DATA/cloud_fraction_crb
cso.tutorial.convert.output.var.cloud_fraction.attrs : { 'coordinates' : None, 'source' : None }
! cloud property:
cso.tutorial.convert.output.var.cloud_radiance_fraction.dims : pixel
cso.tutorial.convert.output.var.cloud_radiance_fraction.from : PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/cloud_radiance_fraction_nitrogendioxide_window
cso.tutorial.convert.output.var.cloud_radiance_fraction.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! quality flag:
cso.tutorial.convert.output.var.qa_value.dims : pixel
cso.tutorial.convert.output.var.qa_value.from : PRODUCT/qa_value
!~ skip some attributes, cf-checker complains ...
cso.tutorial.convert.output.var.qa_value.attrs : { 'valid_min' : None, 'valid_max' : None }
!======================================================================
!===
!=== listing
!===
!======================================================================
! csv file that will hold records per file with:
! - timerange of pixels in file
! - orbit number
cso.tutorial.listing.file : ${my.work}/CSO-data/S5p/listing-NO2-${my.region}.csv
! renew table if file already exists?
cso.tutorial.listing.renew : True
! time range:
cso.tutorial.listing.timerange.start : ${my.timerange.start}
cso.tutorial.listing.timerange.end : ${my.timerange.end}
! filename filters relative to listing file that should be scanned for orbit files;
! names could include time templates ;
! if same orbit is found in multiple directories, the first found is used;
! remove existing table for safety to ensure that this is done correctly ...
cso.tutorial.listing.patterns : RPRO/NO2/${my.region}/%Y/%m/S5p_*.nc \
OFFL/NO2/${my.region}/%Y/%m/S5p_*.nc
! extra columns to be added, read from global attributes:
cso.tutorial.listing.xcolumns : orbit
!======================================================================
!===
!=== catalogue
!===
!======================================================================
! listing file with filenames/timerange.
cso.tutorial.catalogue.input.listing : ${cso.tutorial.listing.file}
! time range:
cso.tutorial.catalogue.timerange.start : ${my.timerange.start}
cso.tutorial.catalogue.timerange.end : ${my.timerange.end}
! target filenames; templates:
! - time values
! - %{orbit} : from listing
! - %{varname} for variable
cso.tutorial.catalogue.output.file : ${my.work}/CSO-data-catalogue/S5p/NO2/${my.region}/%Y/%m/%d/S5p_NO2_%{orbit}__%{varname}.png
! map domain (west east south north)
cso.tutorial.catalogue.domain : ${my.region.west} ${my.region.east} ${my.region.south} ${my.region.north}
! figure size (inches), default is (8,6):
cso.tutorial.catalogue.figsize : ${my.region.figsize}
! renew existing files?
cso.tutorial.catalogue.renew : False
!cso.tutorial.catalogue.renew : True
! variables to be plotted:
cso.tutorial.catalogue.vars : vcd vcd_errvar qa_value \
amf amf_trop nla \
cloud_fraction cloud_radiance_fraction
!! color for no-data values in track, default '0.8' (gray):
!cso.tutorial.catalogue.color_nan : white
!! extra keyword arguments for map:
!cso.tutorial.catalogue.map : resolution='h'
cso.tutorial.catalogue.var.vcd.units : umol/m2
! style:
cso.tutorial.catalogue.var.vcd.vmin : 0.0
! show error as std.dev, convert to vcd units:
cso.tutorial.catalogue.var.vcd_errvar.units : umol/m2
cso.tutorial.catalogue.var.vcd_errvar.vmax : 100.0
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
! style:
cso.tutorial.catalogue.var.amf.vmin : 0.0
cso.tutorial.catalogue.var.amf.vmax : 4.0
! style:
cso.tutorial.catalogue.var.amf_trop.vmin : 0.0
cso.tutorial.catalogue.var.amf_trop.vmax : 4.0
! style:
cso.tutorial.catalogue.var.nla.vmin : 1
cso.tutorial.catalogue.var.nla.vmax : 34
! style:
cso.tutorial.catalogue.var.qa_value.vmin : 0.5
cso.tutorial.catalogue.var.qa_value.vmax : 1.0
cso.tutorial.catalogue.var.qa_value.colors : ['red','yellow','green']
! style:
cso.tutorial.catalogue.var.cloud_fraction.vmax : 1.0
cso.tutorial.catalogue.var.cloud_fraction.colors : ['blue','cyan','white']
! style:
cso.tutorial.catalogue.var.cloud_radiance_fraction.vmax : 1.0
cso.tutorial.catalogue.var.cloud_radiance_fraction.colors : ['blue','cyan','white']
!-----------------------------------------------------------
! catalogue index
!-----------------------------------------------------------
! target location:
cso.tutorial.catalogue-index.outdir : ${my.work}/CSO-data-catalogue/S5p/NO2/${my.region}
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
! title:
cso.tutorial.catalogue-index.header : CSO catalogue
! show info on created page?
cso.tutorial.catalogue-index.info : True
! create new page for each value?
cso.tutorial.catalogue-index.newpage : True
! content type:
cso.tutorial.catalogue-index.type : list
! define row values:
cso.tutorial.catalogue-index.name : date
cso.tutorial.catalogue-index.values : TimeSeries( ${my.timerange.start}, ${my.timerange.end}, '1 day', '%Y%m%d' )
! create new page for each value:
cso.tutorial.catalogue-index.date.newpage : True
! content type:
cso.tutorial.catalogue-index.date.type : table-row
! define row values:
cso.tutorial.catalogue-index.date.name : orbit
cso.tutorial.catalogue-index.date.values : CsvFile( '%{date[0:4]}/%{date[4:6]}/%{date[6:8]}/orbits.csv' )
! content type:
cso.tutorial.catalogue-index.date.orbit.type : table-col
! define column values:
cso.tutorial.catalogue-index.date.orbit.name : var
cso.tutorial.catalogue-index.date.orbit.values : ${cso.tutorial.catalogue.vars}
! content type:
cso.tutorial.catalogue-index.date.orbit.var.type : img
! define image:
cso.tutorial.catalogue-index.date.orbit.var.img : %{date[0:4]}/%{date[4:6]}/%{date[6:8]}/S5p_NO2_%{orbit}__%{var}.png
cso.tutorial.catalogue-index.date.orbit.var.kwargs : height=300
!======================================================================
!===
!=== simulation catalogue
!===
!======================================================================
!-----------------------------------------------------------
! simulation catalogue
!-----------------------------------------------------------
! time range:
cso.tutorial.sim-catalogue.timerange.start : ${my.timerange.start}
cso.tutorial.sim-catalogue.timerange.end : ${my.timerange.end}
cso.tutorial.sim-catalogue.timerange.step : hour
! input files:
cso.tutorial.sim-catalogue.input.data.file : ${my.work}/CSO-oper/CSO_output_%Y%m%d_%H%M_data.nc
cso.tutorial.sim-catalogue.input.state.file : ${my.work}/CSO-oper/CSO_output_%Y%m%d_%H%M_state.nc
! target files, time tempates and variable name are replaced:
cso.tutorial.sim-catalogue.output.file : ${my.work}/CSO-data-sim-catalogue/S5p/NO2/${my.region}/%Y/%m/%d/S5p_NO2_%Y%m%d_%H%M_%{var}.png
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
! map domain used for simulations (west east south north):
cso.tutorial.sim-catalogue.domain : -10 30 35 65
! figure size (inches), default is (8,6):
cso.tutorial.sim-catalogue.figsize : (6,6)
! renew existing files?
!cso.tutorial.sim-catalogue.renew : False
cso.tutorial.sim-catalogue.renew : True
! variables to be plotted:
cso.tutorial.sim-catalogue.vars : yr ys yr_m ys_m tcc
! variable:
cso.tutorial.sim-catalogue.var.yr.source : data:yr
! convert units:
cso.tutorial.sim-catalogue.var.yr.units : 1e15 mlc/cm2
! style:
cso.tutorial.sim-catalogue.var.yr.vmin : 0.0
cso.tutorial.sim-catalogue.var.yr.vmax : 10.0
! variable:
cso.tutorial.sim-catalogue.var.ys.source : state:ys
! convert units:
cso.tutorial.sim-catalogue.var.ys.units : 1e15 mlc/cm2
! style:
cso.tutorial.sim-catalogue.var.ys.vmin : 0.0
cso.tutorial.sim-catalogue.var.ys.vmax : 10.0
! variable:
cso.tutorial.sim-catalogue.var.yr_m.source : state:yr_m
! convert units:
cso.tutorial.sim-catalogue.var.yr_m.units : 1e15 mlc/cm2
! style:
cso.tutorial.sim-catalogue.var.yr_m.vmin : 0.0
cso.tutorial.sim-catalogue.var.yr_m.vmax : 10.0
! variable:
cso.tutorial.sim-catalogue.var.ys_m.source : state:ys_m
! convert units:
cso.tutorial.sim-catalogue.var.ys_m.units : 1e15 mlc/cm2
! style:
cso.tutorial.sim-catalogue.var.ys_m.vmin : 0.0
cso.tutorial.sim-catalogue.var.ys_m.vmax : 10.0
! variable:
cso.tutorial.sim-catalogue.var.tcc.source : state:mod_tcc
! convert units:
cso.tutorial.sim-catalogue.var.tcc.units : 1
! style:
cso.tutorial.sim-catalogue.var.tcc.vmin : 0.0
cso.tutorial.sim-catalogue.var.tcc.vmax : 1.0
!-----------------------------------------------------------
! sim catalogue index
!-----------------------------------------------------------
! target location:
Arjo Segers
committed
cso.tutorial.sim-catalogue-index.outdir : ${my.work}/CSO-data-sim-catalogue/S5p/NO2/CAMS
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
! title:
cso.tutorial.sim-catalogue-index.header : CSO catalogue
! show info on created page?
cso.tutorial.sim-catalogue-index.info : True
! create new page for each value?
cso.tutorial.sim-catalogue-index.newpage : True
! content type:
cso.tutorial.sim-catalogue-index.type : list
! define row values:
cso.tutorial.sim-catalogue-index.name : date
cso.tutorial.sim-catalogue-index.values : TimeSeries( ${my.timerange.start}, ${my.timerange.end}, '1 day', '%Y%m%d' )
! create new page for each value:
cso.tutorial.sim-catalogue-index.date.newpage : True
! content type:
cso.tutorial.sim-catalogue-index.date.type : table-row
! define row values:
cso.tutorial.sim-catalogue-index.date.name : time
cso.tutorial.sim-catalogue-index.date.values : Range( 0, 23, 1, '%2.2i00' )
! content type:
cso.tutorial.sim-catalogue-index.date.time.type : table-col
! define column values:
cso.tutorial.sim-catalogue-index.date.time.name : var
cso.tutorial.sim-catalogue-index.date.time.values : ${cso.tutorial.sim-catalogue.vars}
! content type:
cso.tutorial.sim-catalogue-index.date.time.var.type : img
! define image:
cso.tutorial.sim-catalogue-index.date.time.var.img : %{date[0:4]}/%{date[4:6]}/%{date[6:8]}/S5p_NO2_%{date}_%{time}_%{var}.png
cso.tutorial.sim-catalogue-index.date.time.var.kwargs : height=300
!======================================================================
!===
!=== gridded orbits
!===
!======================================================================
!-----------------------------------------------------------
! gridded orbits
!-----------------------------------------------------------
! time range:
cso.tutorial.gridded.timerange.start : ${my.timerange.start}
cso.tutorial.gridded.timerange.end : ${my.timerange.end}
! renew existing files?
cso.tutorial.gridded.renew : True
!cso.tutorial.gridded.renew : False
Arjo Segers
committed
! target directory, incl. subdir for resolution and filters:
my.gridded.dir : ${my.work}/CSO-gridded/${my.region}__r01x01__qa08
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
!~
! testing ..
my.gridded.region : ${my.region}
! grid definition:
!!~ same as pixel selection on conversion:
!cso.tutorial.gridded.grid.west : ${my.region.west}
!cso.tutorial.gridded.grid.east : ${my.region.east}
!cso.tutorial.gridded.grid.south : ${my.region.south}
!cso.tutorial.gridded.grid.north : ${my.region.north}
!~ observation operator tutorial:
cso.tutorial.gridded.grid.west : -10
cso.tutorial.gridded.grid.east : 30
cso.tutorial.gridded.grid.south : 35
cso.tutorial.gridded.grid.north : 65
! resolution:
cso.tutorial.gridded.grid.dlon : 0.1
cso.tutorial.gridded.grid.dlat : 0.1
! level of recursive splitting of footprint into triangles,
! and assignment of centroids to grid cells;
! for 4-corner footprints, number of centroids is:
! 1 (levels=0), 4 (1), 8 (2), 16 (3), 64 (5), 256 (7)
cso.tutorial.gridded.mapping.levels : 7
!~
! keywords for source files;
! the first one should have the footprints:
cso.tutorial.gridded.sources : data state
! input files for each source type:
cso.tutorial.gridded.source.data : ${my.work}/CSO-oper/CSO_output_%Y%m%d_%H%M_data.nc
cso.tutorial.gridded.source.state : ${my.work}/CSO-oper/CSO_output_%Y%m%d_%H%M_state.nc
!~
! keywords for filters:
cso.tutorial.gridded.filters : quality
! minimum quality value required:
cso.tutorial.gridded.filter.quality.var : qa_value
cso.tutorial.gridded.filter.quality.type : min
cso.tutorial.gridded.filter.quality.min : 0.8
cso.tutorial.gridded.filter.quality.units : 1
!~
! target file, might contain templates:
! %Y,%m,etc : time values
! %{basename} : basename (without extension) of first source file
Arjo Segers
committed
cso.tutorial.gridded.output.file : ${my.gridded.dir}/%Y/%m/CSO_output_%Y%m%d_%H%M_gridded.nc
! pack variables on output:
cso.tutorial.gridded.output.packed : True
! zlib compression level, 0 for no compression:
cso.tutorial.gridded.output.complevel : 1
cso.tutorial.gridded.output.vars : yr ys yr_m ys_m
! input variables:
! data:yr : from data file
! state:ys : from state file
cso.tutorial.gridded.output.yr.source : data:yr
cso.tutorial.gridded.output.ys.source : state:ys
cso.tutorial.gridded.output.yr_m.source : state:yr_m
cso.tutorial.gridded.output.ys_m.source : state:ys_m
!-----------------------------------------------------------
! catalogue of gridded fields
!-----------------------------------------------------------
! time range:
cso.tutorial.gridded-catalogue.timerange.start : ${my.timerange.start}
cso.tutorial.gridded-catalogue.timerange.end : ${my.timerange.end}
Arjo Segers
committed
! hourly fields:
cso.tutorial.gridded-catalogue.timerange.step : hour
! renew existing files?
cso.tutorial.gridded-catalogue.renew : True
!cso.tutorial.gridded-catalogue.renew : False
Arjo Segers
committed
cso.tutorial.gridded-catalogue.output.dir : ${my.gridded.dir}/catalogue
Arjo Segers
committed
cso.tutorial.gridded-catalogue.input.file : ${my.gridded.dir}/%Y/%m/CSO_output_%Y%m%d_%H%M_gridded.nc
Arjo Segers
committed
!cso.tutorial.gridded-catalogue.input.file : ${my.gridded.dir}/CSO_output_%Y%m%d_aver_gridded.nc
! target files, time tempates and variable name are replaced:
Arjo Segers
committed
cso.tutorial.gridded-catalogue.output.file : ${my.gridded.dir}/catalogue/%Y/%m/%d/S5p_RPRO_NO2_%Y%m%d_%H%M_gridded_%{var}.png
Arjo Segers
committed
!cso.tutorial.gridded-catalogue.output.file : ${my.gridded.dir}/catalogue/%Y/%m/%d/S5p_RPRO_NO2_%Y%m%d_aver_gridded_%{var}.png
! figure size (inches), default is (8,6):
cso.tutorial.gridded-catalogue.figsize : (6,6)
! variables to be plotted:
cso.tutorial.gridded-catalogue.vars : yr ys yr_m ys_m
! variable:
cso.tutorial.gridded-catalogue.var.yr.source : yr
cso.tutorial.gridded-catalogue.var.yr.units : umol/m2
! style:
cso.tutorial.gridded-catalogue.var.yr.vmin : 0.0
cso.tutorial.gridded-catalogue.var.yr.vmax : 100.0
cso.tutorial.gridded-catalogue.var.ys.source : ys
cso.tutorial.gridded-catalogue.var.ys.units : umol/m2
! style:
cso.tutorial.gridded-catalogue.var.ys.vmin : 0.0
cso.tutorial.gridded-catalogue.var.ys.vmax : 100.0
cso.tutorial.gridded-catalogue.var.yr_m.source : yr_m
cso.tutorial.gridded-catalogue.var.yr_m.units : umol/m2
! style:
cso.tutorial.gridded-catalogue.var.yr_m.vmin : 0.0
cso.tutorial.gridded-catalogue.var.yr_m.vmax : 100.0
cso.tutorial.gridded-catalogue.var.ys_m.source : ys_m
cso.tutorial.gridded-catalogue.var.ys_m.units : umol/m2
! style:
cso.tutorial.gridded-catalogue.var.ys_m.vmin : 0.0
cso.tutorial.gridded-catalogue.var.ys_m.vmax : 100.0
!-----------------------------------------------------------
! gridded catalogue index
!-----------------------------------------------------------
! target location:
Arjo Segers
committed
cso.tutorial.gridded-catalogue-index.outdir : ${my.gridded.dir}/catalogue
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
! title:
cso.tutorial.gridded-catalogue-index.header : CSO catalogue
! show info on created page?
cso.tutorial.gridded-catalogue-index.info : True
! create new page for each value?
cso.tutorial.gridded-catalogue-index.newpage : True
! content type:
cso.tutorial.gridded-catalogue-index.type : list
! define row values:
cso.tutorial.gridded-catalogue-index.name : date
cso.tutorial.gridded-catalogue-index.values : TimeSeries( ${my.timerange.start}, ${my.timerange.end}, '1 day', '%Y%m%d' )
! create new page for each value:
cso.tutorial.gridded-catalogue-index.date.newpage : True
! content type:
cso.tutorial.gridded-catalogue-index.date.type : table-row
! define row values:
cso.tutorial.gridded-catalogue-index.date.name : time
cso.tutorial.gridded-catalogue-index.date.values : Range( 0, 23, 1, '%2.2i00' )
! content type:
cso.tutorial.gridded-catalogue-index.date.time.type : table-col
! define column values:
cso.tutorial.gridded-catalogue-index.date.time.name : var
cso.tutorial.gridded-catalogue-index.date.time.values : ${cso.tutorial.gridded-catalogue.vars}
! content type:
cso.tutorial.gridded-catalogue-index.date.time.var.type : img
! define image:
cso.tutorial.gridded-catalogue-index.date.time.var.img : %{date[0:4]}/%{date[4:6]}/%{date[6:8]}/S5p_RPRO_NO2_%{date}_%{time}_gridded_%{var}.png
cso.tutorial.gridded-catalogue-index.date.time.var.kwargs : height=300