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!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!!! CSO - CAMS Satellite Operator
!!! Settings for Tutorial.
!!!
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!----------------------------------------------------------
! job tree
!----------------------------------------------------------
! class to create a job tree:
cso.class : utopya.UtopyaJobTree
! list of sub-elements:
cso.elements : tutorial
! class to create a job tree:
cso.tutorial.class : utopya.UtopyaJobTree
! list of sub-elements:
!cso.tutorial.elements : inquire-scihub \
! convert listing catalogue \
! sim-catalogue \
! gridded gridded-catalogue
!~ preprocessor steps one by one ...
!cso.tutorial.elements : convert
!cso.tutorial.elements : listing
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!cso.tutorial.elements : catalogue
! ... after running the obs.oper:
!cso.tutorial.elements : sim-catalogue
!cso.tutorial.elements : gridded
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cso.tutorial.elements : gridded-catalogue
! *
! single step:
cso.tutorial.inquire-scihub.class : utopya.UtopyaJobStep
! two tasks:
cso.tutorial.inquire-scihub.tasks : table plot
!~ inquire available files:
cso.tutorial.inquire-scihub.table.class : cso.CSO_SciHub_Inquire
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cso.tutorial.inquire-scihub.table.args : '${__filename__}', \
rcbase='cso.tutorial.inquire-s5phub-table'
!~ create plot of available versions:
cso.tutorial.inquire-scihub.plot.class : cso.CSO_Inquire_Plot
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cso.tutorial.inquire-scihub.plot.args : '${__filename__}', \
! *
! single step:
cso.tutorial.convert.class : utopya.UtopyaJobStep
cso.tutorial.convert.task.class : cso.CSO_S5p_Convert
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cso.tutorial.convert.task.args : '${__filename__}', \
rcbase='cso.tutorial.convert'
! *
! single step:
cso.tutorial.listing.class : utopya.UtopyaJobStep
! task:
cso.tutorial.listing.task.class : cso.CSO_S5p_Listing
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cso.tutorial.listing.task.args : '${__filename__}', \
! single step:
cso.tutorial.catalogue.class : utopya.UtopyaJobStep
! two tasks:
cso.tutorial.catalogue.tasks : figs index
! catalogue creation task:
cso.tutorial.catalogue.figs.class : cso.CSO_Catalogue
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cso.tutorial.catalogue.figs.args : '${__filename__}', \
rcbase='cso.tutorial.catalogue'
! indexer task:
cso.tutorial.catalogue.index.class : utopya.Indexer
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cso.tutorial.catalogue.index.args : '${__filename__}', \
rcbase='cso.tutorial.catalogue-index'
! *
! single step:
cso.tutorial.sim-catalogue.class : utopya.UtopyaJobStep
! two tasks:
cso.tutorial.sim-catalogue.tasks : figs index
! catalogue creation task:
cso.tutorial.sim-catalogue.figs.class : cso.CSO_SimCatalogue
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cso.tutorial.sim-catalogue.figs.args : '${__filename__}', \
rcbase='cso.tutorial.sim-catalogue'
! indexer task:
cso.tutorial.sim-catalogue.index.class : utopya.Indexer
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cso.tutorial.sim-catalogue.index.args : '${__filename__}', \
rcbase='cso.tutorial.sim-catalogue-index'
!
! * gridded fields
!
! single step:
cso.tutorial.gridded.class : utopya.UtopyaJobStep
! catalogue creation task:
cso.tutorial.gridded.task.class : cso.CSO_GriddedAverage
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cso.tutorial.gridded.task.args : '${__filename__}', \
rcbase='cso.tutorial.gridded'
! *
! single step:
cso.tutorial.gridded-catalogue.class : utopya.UtopyaJobStep
! two tasks:
cso.tutorial.gridded-catalogue.tasks : figs index
! catalogue creation task:
cso.tutorial.gridded-catalogue.figs.class : cso.CSO_GriddedCatalogue
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cso.tutorial.gridded-catalogue.figs.args : '${__filename__}', \
rcbase='cso.tutorial.gridded-catalogue'
! indexer task:
cso.tutorial.gridded-catalogue.index.class : utopya.Indexer
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cso.tutorial.gridded-catalogue.index.args : '${__filename__}', \
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rcbase='cso.tutorial.gridded-catalogue-index'
!======================================================================
!===
!=== settings
!===
!======================================================================
!-----------------------------------------------------------
! domain
!-----------------------------------------------------------
!
! Used for:
! - orbit selection durning download
! - pixel selection
! - map plots
!
! region name:
my.region : CAMS
! CAMS regional ensemble domain:
my.region.west : -30.0
my.region.east : 45.0
my.region.south : 30.0
my.region.north : 76.0
! size of map figures for this region,
! default size is (8,6)
my.region.figsize : (8,6)
!----------------------------------------------------------
! timerange
!----------------------------------------------------------
my.timerange.start : 2018-06-01 00:00
my.timerange.end : 2018-06-03 23:59
!----------------------------------------------------------
!----------------------------------------------------------
! Attributes written to output files.
my.attr.author : Your Name
my.attr.institution : CSO
my.attr.email : Your.Name@cso.org
! base location for work directories:
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my.work : /Scratch/${USER}/CSO-tutorial
!----------------------------------------------------------
! job step defaults
!----------------------------------------------------------
! run jobs in foreground:
*.script.class : utopya.UtopyaJobScriptForeground
! search path for python modules:
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*.pypath : ${CSO_PREFIX}/py
! work directory for jobs;
*.workdir : ${my.work}/__NAME2PATH__
! for new job files, use jobtree settings from this file:
*.rcfile : ${__filename__}
!======================================================================
!===
!===
!======================================================================
! Obtain names of all available S5p files.
! Stored as csv with processing type, processor version, filenames, etc.
cso.tutorial.inquire-s5phub-table.timerange.start : ${my.timerange.start}
cso.tutorial.inquire-s5phub-table.timerange.end : ${my.timerange.end}
!
! server url ;
! provide login/password in ~/.netrc:
!
! machine s5phub.copernicus.eu login s5pguest password s5pguest
!
cso.tutorial.inquire-s5phub-table.url : https://s5phub.copernicus.eu/dhus
!!~ empty for no limitation:
!cso.tutorial.inquire-s5phub-table.area :
!~ domain specified as: west,south:east,north
cso.tutorial.inquire-s5phub-table.area : ${my.region.west},${my.region.south}:${my.region.east},${my.region.north}
! search query, obtained from interactive download:
!
! platformname : Sentinel-5
! producttype : L2__NO2___ | L2__CO____ (always 10 characters!)
! processinglevel : L2
!
cso.tutorial.inquire-s5phub-table.query : platformname:Sentinel-5 AND \
producttype:L2__NO2___ AND \
processinglevel:L2
! output table, date of today:
cso.tutorial.inquire-s5phub-table.output.file : ${my.work}/Copernicus/Copernicus_S5p_NO2_s5phub_%Y-%m-%d.csv
! renew existing plots?
cso.tutorial.inquire-s5phub-plot.renew : True
! listing files:
cso.tutorial.inquire-s5phub-plot.file : ${cso.tutorial.inquire-s5phub-table.output.file}
!!~ specify dates ("yyyy-mm-dd") to use historic tables,
!! default is table of today:
!cso.tutorial.inquire-s5phub-plot.filedate : 2022-01-28
! output figure, date of today:
cso.tutorial.inquire-s5phub-plot.output.file : ${my.work}/Copernicus/Copernicus_S5p_NO2_${my.region}__%Y-%m-%d.png
!======================================================================
!===
!===
!======================================================================
! renew existing files (True|False) ?
cso.tutorial.convert.renew : True
!cso.tutorial.convert.renew : False
! time range:
cso.tutorial.convert.timerange.start : ${my.timerange.start}
cso.tutorial.convert.timerange.end : ${my.timerange.end}
!~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
! input files
!~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
! listing of available source files,
! created by 'inquire-s5phub' job:
cso.tutorial.convert.inquire.file : ${my.work}/Copernicus/Copernicus_S5p_NO2_s5phub_%Y-%m-%d.csv
!!~ historic inquire ...
!cso.tutorial.convert.inquire.filedate : 2022-02-02
! list of processings:
cso.tutorial.convert.processings : RPRO
! list of processor versions, empty for all:
cso.tutorial.convert.processor_versions :
! input directory;
! files are searched here or downloaded to if not present yet;
! supported templates:
! %{processing}
cso.tutorial.convert.input.dir : ${my.work}/Copernicus/S5P/%{processing}/NO2/%Y/%m
! remove downloaded input files after convert?
cso.tutorial.convert.downloads.cleanup : False
! selection names:
cso.tutorial.convert.filters : lons lats valid quality
! filter settings:
cso.tutorial.convert.filter.lons.var : PRODUCT/longitude
cso.tutorial.convert.filter.lons.type : minmax
cso.tutorial.convert.filter.lons.minmax : ${my.region.west} ${my.region.east}
cso.tutorial.convert.filter.lons.units : degrees_east
! filter settings:
cso.tutorial.convert.filter.lats.var : PRODUCT/latitude
cso.tutorial.convert.filter.lats.type : minmax
cso.tutorial.convert.filter.lats.minmax : ${my.region.south} ${my.region.north}
cso.tutorial.convert.filter.lats.units : degrees_north
! skip pixel with "no data", use the "qa_value" variable to check:
cso.tutorial.convert.filter.valid.var : PRODUCT/qa_value
cso.tutorial.convert.filter.valid.type : valid
! Comment in "PRODUCT/qa_value" variable:
! "A continuous quality descriptor,
! varying between 0 (no data) and 1 (full quality data).
! Recommend to ignore data with qa_value < 0.5"
! Recomended is qa_value>=0.75 to remove clouded and other problematic pixels;
! here use 0.5 to include retrievals over clouds and snow/ice.
cso.tutorial.convert.filter.quality.var : PRODUCT/qa_value
cso.tutorial.convert.filter.quality.type : min
cso.tutorial.convert.filter.quality.units : 1
!~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
! output files
!~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
! output directory and filename:
! - times are taken from mid of selection, rounded to hours
! - use '%{processing}' for the processing name
cso.tutorial.convert.output.filename : ${my.work}/CSO-data/S5p/%{processing}/NO2/${my.region}/%Y/%m/S5p_%{processing}_NO2_%{orbit}.nc
! pack variables on output:
cso.tutorial.convert.output.packed : True
! zlib compression level, 0 for no compression:
cso.tutorial.convert.output.complevel : 1
! global attributes:
cso.tutorial.convert.output.attrs : format Conventions \
author institution email
!
cso.tutorial.convert.output.attr.format : 1.0
cso.tutorial.convert.output.attr.Conventions : CF-1.7
cso.tutorial.convert.output.attr.author : ${my.attr.author}
cso.tutorial.convert.output.attr.institution : ${my.attr.institution}
cso.tutorial.convert.output.attr.email : ${my.attr.email}
! no need to swap layes:
cso.tutorial.convert.swap_layers : False
! ~ variables
! which fields to be put out ?
cso.tutorial.convert.output.vars : longitude longitude_bounds \
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track_longitude track_longitude_bounds \
track_latitude track_latitude_bounds \
time \
qa_value \
pressure kernel_trop amf amf_trop nla \
vcd vcd_errvar \
cloud_fraction cloud_radiance_fraction
!
! Describe per variable:
! * .dims : dimensions list:
! pixel : selected pixels
! corner : number of footprint bounds (probably 4)
! layer : number of layers in atmospheric profile (layers in kernel)
! layeri : number of layer interfaces in atmospheric profile (layer+1)
! retr : number of layers in retrieval product (1 for columns) ;
! for error covariance use (retr,retr0) to avoid repeated dimensions
! track_scan : original scan index in 2D track
! track_pixel : original ground pixel in 2D track
! * .specal : keyword to select special processing
! * None : no special processing (default)
! * track_longitude : longiudes at centers of original 2D track
! * track_latitude : latiudes at centers of original 2D track
! * track_longitude_bounds : longiude bounds at centers of original 2D track
! * track_latitude_bounds : latiude bounds at centers of original 2D track
! * .units : target units if different from original
! * .oper : special postprocessing, currently supported:
! * square : fill variable with squared valued (used to form variance from standard deviation)
! In case no special processing is needed:
! * .from : original variable (group path and variable name)
!
! center longitudes; remove bounds attribute, no coordinate ...
cso.tutorial.convert.output.var.longitude.dims : pixel
cso.tutorial.convert.output.var.longitude.from : PRODUCT/longitude
cso.tutorial.convert.output.var.longitude.attrs : { 'bounds' : None }
! center latitudes; remove bounds attribute, no coordinate ...
cso.tutorial.convert.output.var.latitude.dims : pixel
cso.tutorial.convert.output.var.latitude.from : PRODUCT/latitude
cso.tutorial.convert.output.var.latitude.attrs : { 'bounds' : None }
! corner longitudes; no units in file:
cso.tutorial.convert.output.var.longitude_bounds.dims : pixel corner
cso.tutorial.convert.output.var.longitude_bounds.from : PRODUCT/SUPPORT_DATA/GEOLOCATIONS/longitude_bounds
cso.tutorial.convert.output.var.longitude_bounds.units : degrees_east
! corner latitudes, no units in file:
cso.tutorial.convert.output.var.latitude_bounds.dims : pixel corner
cso.tutorial.convert.output.var.latitude_bounds.from : PRODUCT/SUPPORT_DATA/GEOLOCATIONS/latitude_bounds
cso.tutorial.convert.output.var.latitude_bounds.units : degrees_north
! original track:
!~ center lon; remove bounds attribute, no coordinate ...
cso.tutorial.convert.output.var.track_longitude.dims : track_scan track_pixel
cso.tutorial.convert.output.var.track_longitude.special : track_longitude
cso.tutorial.convert.output.var.track_longitude.from : PRODUCT/longitude
cso.tutorial.convert.output.var.track_longitude.attrs : { 'bounds' : None }
!~ center lat; remove bounds attribute, no coordinate ...
cso.tutorial.convert.output.var.track_latitude.dims : track_scan track_pixel
cso.tutorial.convert.output.var.track_latitude.special : track_latitude
cso.tutorial.convert.output.var.track_latitude.from : PRODUCT/latitude
cso.tutorial.convert.output.var.track_latitude.attrs : { 'bounds' : None }
!~ corner lons
cso.tutorial.convert.output.var.track_longitude_bounds.dims : track_scan track_pixel corner
cso.tutorial.convert.output.var.track_longitude_bounds.special : track_longitude_bounds
cso.tutorial.convert.output.var.track_longitude_bounds.from : PRODUCT/SUPPORT_DATA/GEOLOCATIONS/longitude_bounds
cso.tutorial.convert.output.var.track_longitude_bounds.units : degrees_east
!~ corner lats
cso.tutorial.convert.output.var.track_latitude_bounds.dims : track_scan track_pixel corner
cso.tutorial.convert.output.var.track_latitude_bounds.special : track_latitude_bounds
cso.tutorial.convert.output.var.track_latitude_bounds.from : PRODUCT/SUPPORT_DATA/GEOLOCATIONS/latitude_bounds
cso.tutorial.convert.output.var.track_latitude_bounds.units : degrees_north
! time value per scan line
cso.tutorial.convert.output.var.time.dims : pixel
cso.tutorial.convert.output.var.time.special : time-delta
cso.tutorial.convert.output.var.time.tref : PRODUCT/time
cso.tutorial.convert.output.var.time.dt : PRODUCT/delta_time
! vertical column density:
cso.tutorial.convert.output.var.vcd.dims : pixel retr
cso.tutorial.convert.output.var.vcd.from : PRODUCT/nitrogendioxide_tropospheric_column
! error variance in vertical column density (after application of kernel),
! fill with single element 'covariance matrix', from square of standard error:
! use dims with different names to avoid that cf-checker complains:
cso.tutorial.convert.output.var.vcd_errvar.dims : pixel retr retr0
cso.tutorial.convert.output.var.vcd_errvar.special : square
cso.tutorial.convert.output.var.vcd_errvar.from : PRODUCT/nitrogendioxide_tropospheric_column_precision_kernel
!~ skip standard name, modifier "standard_error" is not valid anymore:
cso.tutorial.convert.output.var.vcd_errvar.attrs : { 'standard_name' : None }
! Convert from hybride coefficient bounds in (2,nlev) aray to 3D half level pressure:
cso.tutorial.convert.output.var.pressure.dims : pixel layeri
cso.tutorial.convert.output.var.pressure.special : hybounds_to_pressure
cso.tutorial.convert.output.var.pressure.sp : PRODUCT/SUPPORT_DATA/INPUT_DATA/surface_pressure
cso.tutorial.convert.output.var.pressure.hyab : PRODUCT/tm5_constant_a
cso.tutorial.convert.output.var.pressure.hybb : PRODUCT/tm5_constant_b
cso.tutorial.convert.output.var.pressure.units : Pa
! (total) airmass factor:
cso.tutorial.convert.output.var.amf.dims : pixel retr
cso.tutorial.convert.output.var.amf.from : PRODUCT/air_mass_factor_total
cso.tutorial.convert.output.var.amf.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! tropospheric airmass factor:
cso.tutorial.convert.output.var.amf_trop.dims : pixel retr
cso.tutorial.convert.output.var.amf_trop.from : PRODUCT/air_mass_factor_troposphere
cso.tutorial.convert.output.var.amf_trop.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! number of apriori layers in retrieval layer,
! enforce that it is stored as a short integer:
cso.tutorial.convert.output.var.nla.dims : pixel retr
cso.tutorial.convert.output.var.nla.dtype : i2
cso.tutorial.convert.output.var.nla.from : PRODUCT/tm5_tropopause_layer_index
cso.tutorial.convert.output.var.nla.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! description:
! kernel := averaging_kernel * amf/amf_trop
! for layers up to l_trop, zero above
cso.tutorial.convert.output.var.kernel_trop.dims : pixel layer retr
cso.tutorial.convert.output.var.kernel_trop.special : kernel_trop
cso.tutorial.convert.output.var.kernel_trop.avk : PRODUCT/averaging_kernel
cso.tutorial.convert.output.var.kernel_trop.amf : PRODUCT/air_mass_factor_total
cso.tutorial.convert.output.var.kernel_trop.amft : PRODUCT/air_mass_factor_troposphere
cso.tutorial.convert.output.var.kernel_trop.troplayer : PRODUCT/tm5_tropopause_layer_index
cso.tutorial.convert.output.var.kernel_trop.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! cloud property:
cso.tutorial.convert.output.var.cloud_fraction.dims : pixel
cso.tutorial.convert.output.var.cloud_fraction.from : PRODUCT/SUPPORT_DATA/INPUT_DATA/cloud_fraction_crb
cso.tutorial.convert.output.var.cloud_fraction.attrs : { 'coordinates' : None, 'source' : None }
! cloud property:
cso.tutorial.convert.output.var.cloud_radiance_fraction.dims : pixel
cso.tutorial.convert.output.var.cloud_radiance_fraction.from : PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/cloud_radiance_fraction_nitrogendioxide_window
cso.tutorial.convert.output.var.cloud_radiance_fraction.attrs : { 'coordinates' : None, 'ancillary_variables' : None }
! quality flag:
cso.tutorial.convert.output.var.qa_value.dims : pixel
cso.tutorial.convert.output.var.qa_value.from : PRODUCT/qa_value
!~ skip some attributes, cf-checker complains ...
cso.tutorial.convert.output.var.qa_value.attrs : { 'valid_min' : None, 'valid_max' : None }
!======================================================================
!===
!=== listing
!===
!======================================================================
! csv file that will hold records per file with:
! - timerange of pixels in file
! - orbit number
cso.tutorial.listing.file : ${my.work}/CSO-data/S5p/listing-NO2-${my.region}.csv
! renew table if file already exists?
cso.tutorial.listing.renew : True
! time range:
cso.tutorial.listing.timerange.start : ${my.timerange.start}
cso.tutorial.listing.timerange.end : ${my.timerange.end}
! filename filters relative to listing file that should be scanned for orbit files;
! names could include time templates ;
! if same orbit is found in multiple directories, the first found is used;
! remove existing table for safety to ensure that this is done correctly ...
cso.tutorial.listing.patterns : RPRO/NO2/${my.region}/%Y/%m/S5p_*.nc \
OFFL/NO2/${my.region}/%Y/%m/S5p_*.nc
! adhoc: use the time for which file is valid as timerange;
! this is used for the synthetic S4 data that have no time record ...
cso.tutorial.listing.use_t : False
! extra columns to be added, read from global attributes:
cso.tutorial.listing.xcolumns : orbit
!======================================================================
!===
!=== catalogue
!===
!======================================================================
! listing file with filenames/timerange.
cso.tutorial.catalogue.input.listing : ${cso.tutorial.listing.file}
! time range:
cso.tutorial.catalogue.timerange.start : ${my.timerange.start}
cso.tutorial.catalogue.timerange.end : ${my.timerange.end}
! target filenames; templates:
! - time values
! - %{orbit} : from listing
! - %{varname} for variable
cso.tutorial.catalogue.output.file : ${my.work}/CSO-data-catalogue/S5p/NO2/${my.region}/%Y/%m/%d/S5p_NO2_%{orbit}__%{varname}.png
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! map domain (west east south north)
cso.tutorial.catalogue.domain : ${my.region.west} ${my.region.east} ${my.region.south} ${my.region.north}
! figure size (inches), default is (8,6):
cso.tutorial.catalogue.figsize : ${my.region.figsize}
! renew existing files?
cso.tutorial.catalogue.renew : False
!cso.tutorial.catalogue.renew : True
! variables to be plotted:
cso.tutorial.catalogue.vars : vcd vcd_errvar qa_value \
amf amf_trop nla \
cloud_fraction cloud_radiance_fraction
! convert units:
cso.tutorial.catalogue.var.vcd.units : 1e15 mlc/cm2
! style:
cso.tutorial.catalogue.var.vcd.vmin : 0.0
cso.tutorial.catalogue.var.vcd.vmax : 10.0
! convert units:
cso.tutorial.catalogue.var.vcd_errvar.units : 1e15 mlc/cm2
! style:
cso.tutorial.catalogue.var.vcd_errvar.vmax : 10.0
! style:
cso.tutorial.catalogue.var.amf.vmin : 0.0
cso.tutorial.catalogue.var.amf.vmax : 4.0
! style:
cso.tutorial.catalogue.var.amf_trop.vmin : 0.0
cso.tutorial.catalogue.var.amf_trop.vmax : 4.0
! style:
cso.tutorial.catalogue.var.nla.vmin : 1
cso.tutorial.catalogue.var.nla.vmax : 34
! style:
cso.tutorial.catalogue.var.qa_value.vmin : 0.5
cso.tutorial.catalogue.var.qa_value.vmax : 1.0
cso.tutorial.catalogue.var.qa_value.colors : ['red','yellow','green']
! style:
cso.tutorial.catalogue.var.cloud_fraction.vmax : 1.0
cso.tutorial.catalogue.var.cloud_fraction.colors : ['blue','cyan','white']
! style:
cso.tutorial.catalogue.var.cloud_radiance_fraction.vmax : 1.0
cso.tutorial.catalogue.var.cloud_radiance_fraction.colors : ['blue','cyan','white']
!-----------------------------------------------------------
! catalogue index
!-----------------------------------------------------------
! target location:
cso.tutorial.catalogue-index.outdir : ${my.work}/CSO-data-catalogue/S5p/NO2/${my.region}
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! title:
cso.tutorial.catalogue-index.header : CSO catalogue
! show info on created page?
cso.tutorial.catalogue-index.info : True
! create new page for each value?
cso.tutorial.catalogue-index.newpage : True
! content type:
cso.tutorial.catalogue-index.type : list
! define row values:
cso.tutorial.catalogue-index.name : date
cso.tutorial.catalogue-index.values : TimeSeries( ${my.timerange.start}, ${my.timerange.end}, '1 day', '%Y%m%d' )
! create new page for each value:
cso.tutorial.catalogue-index.date.newpage : True
! content type:
cso.tutorial.catalogue-index.date.type : table-row
! define row values:
cso.tutorial.catalogue-index.date.name : orbit
cso.tutorial.catalogue-index.date.values : CsvFile( '%{date[0:4]}/%{date[4:6]}/%{date[6:8]}/orbits.csv' )
! content type:
cso.tutorial.catalogue-index.date.orbit.type : table-col
! define column values:
cso.tutorial.catalogue-index.date.orbit.name : var
cso.tutorial.catalogue-index.date.orbit.values : ${cso.tutorial.catalogue.vars}
! content type:
cso.tutorial.catalogue-index.date.orbit.var.type : img
! define image:
cso.tutorial.catalogue-index.date.orbit.var.img : %{date[0:4]}/%{date[4:6]}/%{date[6:8]}/S5p_NO2_%{orbit}__%{var}.png
cso.tutorial.catalogue-index.date.orbit.var.kwargs : height=300
!======================================================================
!===
!=== simulation catalogue
!===
!======================================================================
!-----------------------------------------------------------
! simulation catalogue
!-----------------------------------------------------------
! time range:
cso.tutorial.sim-catalogue.timerange.start : ${my.timerange.start}
cso.tutorial.sim-catalogue.timerange.end : ${my.timerange.end}
cso.tutorial.sim-catalogue.timerange.step : hour
! input files:
cso.tutorial.sim-catalogue.input.data.file : ${my.work}/CSO-oper/CSO_output_%Y%m%d_%H%M_data.nc
cso.tutorial.sim-catalogue.input.state.file : ${my.work}/CSO-oper/CSO_output_%Y%m%d_%H%M_state.nc
! target files, time tempates and variable name are replaced:
cso.tutorial.sim-catalogue.output.file : ${my.work}/CSO-data-sim-catalogue/S5p/NO2/${my.region}/%Y/%m/%d/S5p_NO2_%Y%m%d_%H%M_%{var}.png
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! map domain used for simulations (west east south north):
cso.tutorial.sim-catalogue.domain : -10 30 35 65
! figure size (inches), default is (8,6):
cso.tutorial.sim-catalogue.figsize : (6,6)
! renew existing files?
!cso.tutorial.sim-catalogue.renew : False
cso.tutorial.sim-catalogue.renew : True
! variables to be plotted:
cso.tutorial.sim-catalogue.vars : yr ys yr_m ys_m tcc
! variable:
cso.tutorial.sim-catalogue.var.yr.source : data:yr
! convert units:
cso.tutorial.sim-catalogue.var.yr.units : 1e15 mlc/cm2
! style:
cso.tutorial.sim-catalogue.var.yr.vmin : 0.0
cso.tutorial.sim-catalogue.var.yr.vmax : 10.0
! variable:
cso.tutorial.sim-catalogue.var.ys.source : state:ys
! convert units:
cso.tutorial.sim-catalogue.var.ys.units : 1e15 mlc/cm2
! style:
cso.tutorial.sim-catalogue.var.ys.vmin : 0.0
cso.tutorial.sim-catalogue.var.ys.vmax : 10.0
! variable:
cso.tutorial.sim-catalogue.var.yr_m.source : state:yr_m
! convert units:
cso.tutorial.sim-catalogue.var.yr_m.units : 1e15 mlc/cm2
! style:
cso.tutorial.sim-catalogue.var.yr_m.vmin : 0.0
cso.tutorial.sim-catalogue.var.yr_m.vmax : 10.0
! variable:
cso.tutorial.sim-catalogue.var.ys_m.source : state:ys_m
! convert units:
cso.tutorial.sim-catalogue.var.ys_m.units : 1e15 mlc/cm2
! style:
cso.tutorial.sim-catalogue.var.ys_m.vmin : 0.0
cso.tutorial.sim-catalogue.var.ys_m.vmax : 10.0
! variable:
cso.tutorial.sim-catalogue.var.tcc.source : state:mod_tcc
! convert units:
cso.tutorial.sim-catalogue.var.tcc.units : 1
! style:
cso.tutorial.sim-catalogue.var.tcc.vmin : 0.0
cso.tutorial.sim-catalogue.var.tcc.vmax : 1.0
!-----------------------------------------------------------
! sim catalogue index
!-----------------------------------------------------------
! target location:
Arjo Segers
committed
cso.tutorial.sim-catalogue-index.outdir : ${my.work}/CSO-data-sim-catalogue/S5p/NO2/CAMS
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! title:
cso.tutorial.sim-catalogue-index.header : CSO catalogue
! show info on created page?
cso.tutorial.sim-catalogue-index.info : True
! create new page for each value?
cso.tutorial.sim-catalogue-index.newpage : True
! content type:
cso.tutorial.sim-catalogue-index.type : list
! define row values:
cso.tutorial.sim-catalogue-index.name : date
cso.tutorial.sim-catalogue-index.values : TimeSeries( ${my.timerange.start}, ${my.timerange.end}, '1 day', '%Y%m%d' )
! create new page for each value:
cso.tutorial.sim-catalogue-index.date.newpage : True
! content type:
cso.tutorial.sim-catalogue-index.date.type : table-row
! define row values:
cso.tutorial.sim-catalogue-index.date.name : time
cso.tutorial.sim-catalogue-index.date.values : Range( 0, 23, 1, '%2.2i00' )
! content type:
cso.tutorial.sim-catalogue-index.date.time.type : table-col
! define column values:
cso.tutorial.sim-catalogue-index.date.time.name : var
cso.tutorial.sim-catalogue-index.date.time.values : ${cso.tutorial.sim-catalogue.vars}
! content type:
cso.tutorial.sim-catalogue-index.date.time.var.type : img
! define image:
cso.tutorial.sim-catalogue-index.date.time.var.img : %{date[0:4]}/%{date[4:6]}/%{date[6:8]}/S5p_NO2_%{date}_%{time}_%{var}.png
cso.tutorial.sim-catalogue-index.date.time.var.kwargs : height=300
!======================================================================
!===
!=== gridded orbits
!===
!======================================================================
!-----------------------------------------------------------
! gridded orbits
!-----------------------------------------------------------
! time range:
cso.tutorial.gridded.timerange.start : ${my.timerange.start}
cso.tutorial.gridded.timerange.end : ${my.timerange.end}
! renew existing files?
cso.tutorial.gridded.renew : True
!cso.tutorial.gridded.renew : False
Arjo Segers
committed
! target directory, incl. subdir for resolution and filters:
my.gridded.dir : ${my.work}/CSO-gridded/${my.region}__r01x01__qa08
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!~
! testing ..
my.gridded.region : ${my.region}
! grid definition:
!!~ same as pixel selection on conversion:
!cso.tutorial.gridded.grid.west : ${my.region.west}
!cso.tutorial.gridded.grid.east : ${my.region.east}
!cso.tutorial.gridded.grid.south : ${my.region.south}
!cso.tutorial.gridded.grid.north : ${my.region.north}
!~ observation operator tutorial:
cso.tutorial.gridded.grid.west : -10
cso.tutorial.gridded.grid.east : 30
cso.tutorial.gridded.grid.south : 35
cso.tutorial.gridded.grid.north : 65
! resolution:
cso.tutorial.gridded.grid.dlon : 0.1
cso.tutorial.gridded.grid.dlat : 0.1
! level of recursive splitting of footprint into triangles,
! and assignment of centroids to grid cells;
! for 4-corner footprints, number of centroids is:
! 1 (levels=0), 4 (1), 8 (2), 16 (3), 64 (5), 256 (7)
cso.tutorial.gridded.mapping.levels : 7
!~
! keywords for source files;
! the first one should have the footprints:
cso.tutorial.gridded.sources : data state
! input files for each source type:
cso.tutorial.gridded.source.data : ${my.work}/CSO-oper/CSO_output_%Y%m%d_%H%M_data.nc
cso.tutorial.gridded.source.state : ${my.work}/CSO-oper/CSO_output_%Y%m%d_%H%M_state.nc
!~
! keywords for filters:
cso.tutorial.gridded.filters : quality
! minimum quality value required:
cso.tutorial.gridded.filter.quality.var : qa_value
cso.tutorial.gridded.filter.quality.type : min
cso.tutorial.gridded.filter.quality.min : 0.8
cso.tutorial.gridded.filter.quality.units : 1
!~
! target file, might contain templates:
! %Y,%m,etc : time values
! %{basename} : basename (without extension) of first source file
Arjo Segers
committed
cso.tutorial.gridded.output.file : ${my.gridded.dir}/%Y/%m/CSO_output_%Y%m%d_%H%M_gridded.nc
! pack variables on output:
cso.tutorial.gridded.output.packed : True
! zlib compression level, 0 for no compression:
cso.tutorial.gridded.output.complevel : 1
cso.tutorial.gridded.output.vars : yr ys yr_m ys_m
! input variables:
! data:yr : from data file
! state:ys : from state file
cso.tutorial.gridded.output.yr.source : data:yr
cso.tutorial.gridded.output.ys.source : state:ys
cso.tutorial.gridded.output.yr_m.source : state:yr_m
cso.tutorial.gridded.output.ys_m.source : state:ys_m
!-----------------------------------------------------------
! catalogue of gridded fields
!-----------------------------------------------------------
! time range:
cso.tutorial.gridded-catalogue.timerange.start : ${my.timerange.start}
cso.tutorial.gridded-catalogue.timerange.end : ${my.timerange.end}
Arjo Segers
committed
! hourly fields:
cso.tutorial.gridded-catalogue.timerange.step : hour
! renew existing files?
cso.tutorial.gridded-catalogue.renew : True
!cso.tutorial.gridded-catalogue.renew : False
Arjo Segers
committed
cso.tutorial.gridded-catalogue.output.dir : ${my.gridded.dir}/catalogue
Arjo Segers
committed
cso.tutorial.gridded-catalogue.input.file : ${my.gridded.dir}/%Y/%m/CSO_output_%Y%m%d_%H%M_gridded.nc
Arjo Segers
committed
!cso.tutorial.gridded-catalogue.input.file : ${my.gridded.dir}/CSO_output_%Y%m%d_aver_gridded.nc
! target files, time tempates and variable name are replaced:
Arjo Segers
committed
cso.tutorial.gridded-catalogue.output.file : ${my.gridded.dir}/catalogue/%Y/%m/%d/S5p_RPRO_NO2_%Y%m%d_%H%M_gridded_%{var}.png
Arjo Segers
committed
!cso.tutorial.gridded-catalogue.output.file : ${my.gridded.dir}/catalogue/%Y/%m/%d/S5p_RPRO_NO2_%Y%m%d_aver_gridded_%{var}.png
! figure size (inches), default is (8,6):
cso.tutorial.gridded-catalogue.figsize : (6,6)
! variables to be plotted:
cso.tutorial.gridded-catalogue.vars : yr ys yr_m ys_m
! variable:
cso.tutorial.gridded-catalogue.var.yr.source : yr
! convert units:
cso.tutorial.gridded-catalogue.var.yr.units : 1e15 mlc/cm2
! style:
cso.tutorial.gridded-catalogue.var.yr.vmin : 0.0
cso.tutorial.gridded-catalogue.var.yr.vmax : 10.0
! variable:
cso.tutorial.gridded-catalogue.var.ys.source : ys
! convert units:
cso.tutorial.gridded-catalogue.var.ys.units : 1e15 mlc/cm2
! style:
cso.tutorial.gridded-catalogue.var.ys.vmin : 0.0
cso.tutorial.gridded-catalogue.var.ys.vmax : 10.0
! variable:
cso.tutorial.gridded-catalogue.var.yr_m.source : yr_m
! convert units:
cso.tutorial.gridded-catalogue.var.yr_m.units : 1e15 mlc/cm2
! style:
cso.tutorial.gridded-catalogue.var.yr_m.vmin : 0.0
cso.tutorial.gridded-catalogue.var.yr_m.vmax : 10.0
! variable:
cso.tutorial.gridded-catalogue.var.ys_m.source : ys_m
! convert units:
cso.tutorial.gridded-catalogue.var.ys_m.units : 1e15 mlc/cm2
! style:
cso.tutorial.gridded-catalogue.var.ys_m.vmin : 0.0
cso.tutorial.gridded-catalogue.var.ys_m.vmax : 10.0
!-----------------------------------------------------------
! gridded catalogue index
!-----------------------------------------------------------
! target location:
Arjo Segers
committed
cso.tutorial.gridded-catalogue-index.outdir : ${my.gridded.dir}/catalogue
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! title:
cso.tutorial.gridded-catalogue-index.header : CSO catalogue
! show info on created page?
cso.tutorial.gridded-catalogue-index.info : True
! create new page for each value?
cso.tutorial.gridded-catalogue-index.newpage : True
! content type:
cso.tutorial.gridded-catalogue-index.type : list
! define row values:
cso.tutorial.gridded-catalogue-index.name : date
cso.tutorial.gridded-catalogue-index.values : TimeSeries( ${my.timerange.start}, ${my.timerange.end}, '1 day', '%Y%m%d' )
! create new page for each value:
cso.tutorial.gridded-catalogue-index.date.newpage : True
! content type:
cso.tutorial.gridded-catalogue-index.date.type : table-row
! define row values:
cso.tutorial.gridded-catalogue-index.date.name : time
cso.tutorial.gridded-catalogue-index.date.values : Range( 0, 23, 1, '%2.2i00' )
! content type:
cso.tutorial.gridded-catalogue-index.date.time.type : table-col
! define column values:
cso.tutorial.gridded-catalogue-index.date.time.name : var
cso.tutorial.gridded-catalogue-index.date.time.values : ${cso.tutorial.gridded-catalogue.vars}
! content type:
cso.tutorial.gridded-catalogue-index.date.time.var.type : img
! define image:
cso.tutorial.gridded-catalogue-index.date.time.var.img : %{date[0:4]}/%{date[4:6]}/%{date[6:8]}/S5p_RPRO_NO2_%{date}_%{time}_gridded_%{var}.png
cso.tutorial.gridded-catalogue-index.date.time.var.kwargs : height=300
!======================================================================
!===
!=== end
!===
!======================================================================