Update CLI manual with with statement for batch run command from the simulation directory.

geoloop stochastic-run CONFIG.json

```

Creates plots of simulation results (e.g. temperature-depth profiles, time-plots of system variables)

Creates plots of simulation results (e.g. temperature-depth profiles, time-plots of system variables).

---

Geoloop batch provides commands to build batch configuration JSON files and to execute the batch script. Note: all

batch commands come with their own --help method.

The batch commands should be executed from the directory where the batch configuration JSON and linked configuration commands

are stored. For an example, see [Simple Simulation](../examples/simple_simulation/simple_simulation.md). 

## Creating batch Configuration Files

### A. Using `batch create`

```bash

geoloop batch create batch.json \

    --process-lithology path/to/lithology.json \

    --calculate-loadprofile path/to/loadprofile.json \

    --single-run path/to/simulation.json \

    --plot path/to/plot.json

    --process-lithology lithology.json \

    --calculate-loadprofile loadprofile.json \

    --single-run simulation.json \

    --plot plot.json

```

Each flag adds a new step.